FOREST, FELIX1*, VINCENT SAVOLAINEN1, MARK W CHASE1, ANNE BRUNEAU2, RICK LUPIA3, and PETER R CRANE4. 1Jodrell Laboratory, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3DS, United Kingdom; 2Institut de recherche en biologie vegetale, 4101 Sherbrooke est, Montreal (Quebec), H1X 2B2, Canada; 3School of Geology and Geophysics, The University of Oklahoma, 100 East Boyd St., Norman, OK 73019, USA; 4Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB, United Kingdom. - Estimating divergence times in Betulaceae: nrDNA sequences, multiple calibration points, and confidence intervals.
We present a phylogenetic analysis of the Betulaceae including at
least one species of each subgeneric division (26 taxa) of the six
genera (Betula, Alnus, Carpinus, Corylus,
Ostrya, Ostryopsis). Parsimony analyses based on
ribosomal DNA sequences of 5S gene spacers and ITS support the
monophyly of the subfamilies and all genera. Likelihood ratio tests
show rate heterogeneity across lineages, and therefore we made the
phylogenetic trees ultra-metric by transforming ML and MP branch
lengths (HKY85 + gamma model of DNA evolution) using the
non-parametric rate smoothing method of Sanderson. We estimated
divergence times within the family using one of the six most
parsimonious trees and six calibration points from the extensive
fossil record of Betulaceae. Five of these fossils are from extant
members of the family, one of each genus except Ostryopsis,
which is not represented in the fossil record. The sixth fossil is the
extinct Alnus-type pollen Alnipollenites from the
Santonian. The presence of arci in Alnipollenites is
characteristic of genus Alnus, thus making it the earliest
evidence in the fossil record for Betulaceae. The calibration was
performed using both the stem lineage and crown group nodes. The
resulting estimates were compared to the fossil estimates and used
collectively to determine the most appropriate position for the
fossils. Using methods developed by Marshall, the confidence interval
of the stratigraphic range of Alnus was assessed using the
well-documented palynological record of the genus and its relatives
such as Alnipollenites. The results of these confidence
interval evaluations were compared to the molecular estimates.
Key words: Betulaceae, calibration, confidence intervals, fossils, NPRS, nrDNA